Scaffold Ga0208235_1000973

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1000973
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5600
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F051740	Metagenome / Metatranscriptome	143	N
F068819	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_10009732	F018511	N/A	MKGNSIWGELADRIPEEYKTQVMATVDRTYRVLSIDPSDMDYLFQIYNNFVNNYEPERRNCPACRTKVVGKMRQIVQFWRDGNQ
Ga0208235_10009738	F051740	N/A	MIVREKSKLMIYVGADPTGKAGILKKAIGNFTQAELRGWYNTNPTSVSQHVIFTPEKKTYEPNKEDDSSSSEQG
Ga0208235_10009739	F068819	GAG	MSQIKKTIQAVPNRANRNLKRNNSPLLASVTLDTSNTMLVQEDIFNEPSRERLDFTGAKWVRFFTQKDDFLKSLIAIVNNSPTLRRIIEDKVNMVVGDGFIPMKGKSNTLLTTSMKGEVITDISLNEIEEVIGQVNLHAQNLQEVLGSLAFDYDAFGNCFAEIVRGKVGSQPFTYIYHVPVYNIGIRKAEADQII