NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208235_1000757

Scaffold Ga0208235_1000757


Overview

Basic Information
Taxon OID3300020530 Open in IMG/M
Scaffold IDGa0208235_1000757 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6668
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005702Metagenome392Y
F005846Metagenome388Y
F010463Metagenome303N
F023833Metagenome208Y
F027777Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0208235_10007571F005846AGTAGGVPANHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKATDDGKYPYITNPNYCSPAWQKQRIRW
Ga0208235_100075711F010463N/AMVLAATIHRVKMCEDKLREFEQMVTTLTATMAQNRAELASKGLEKFVIGVTTPLDIPKELIPTYGKAGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHPTTILFAKSRNFVVRKAKGGSR
Ga0208235_10007572F005702GAGGVIFGLIIFVGLVIVRGLYMIAQHIDQQNYERRRFYLSVAADLDRLDKIVAEGNQPKQPELVLPTKNWVGRN
Ga0208235_10007574F027777AGGAMSEEMPTFWHQEPAKKKLPNETTDEWIVRVFGPIPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ
Ga0208235_10007576F023833AGGAMKSHSELVQDIINDAMNKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLG
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Biomedical Sciences Research Center "Alexander Fleming"
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