Scaffold Ga0208235_1000698

Overview

Basic Information

• Taxon OID: 3300020530
• Scaffold ID: Ga0208235_1000698
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7105
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064669	Metagenome / Metatranscriptome	128	N
F066729	Metagenome / Metatranscriptome	126	N
F082597	Metagenome / Metatranscriptome	113	N
F099193	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208235_100069814	F082597	AGGA	MTLSTYWHNLVERGKIHFGPLQVQVDYSYEEEPLESLFPEESAEWYAKTAKAVERSDMPYVVARATVSLDGVQLAHNTLGGLLYDSWEEFERSMTEDDHGLIAETVDDARDQWDKMQALMTQPKVVA
Ga0208235_100069817	F066729	GGAGG	MTTIQVPNNSLWQYIERDHIDSSIKKTIWEEFVLSHQDEFAERVSEIAEEMWNNYNQGAA
Ga0208235_10006982	F064669	AGAAGG	MANSRALHPVEQWVQHITRTTPDLILGTLQHADLDLAQQLSHQMQLRGLTTQDIERLKNRKQPVSTT
Ga0208235_10006983	F099193	GGAGG	MYIQFDESRLKRAFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLWDWDPDKKECTLQLRWGDDQNNHEQYSHLEELDEQEYLRQYDEYVLSVKLTDLVS