Scaffold Ga0208233_1004383

Overview

Basic Information

• Taxon OID: 3300020529
• Scaffold ID: Ga0208233_1004383
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2339
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → unclassified Brachybacterium → Brachybacterium sp. FME24 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043833	Metagenome / Metatranscriptome	155	Y
F050892	Metagenome / Metatranscriptome	144	Y
F058936	Metagenome / Metatranscriptome	134	N
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208233_10043832	F102508	N/A	MNRLSDRVSLAEFLDIKRLDATMYHLGGLRASWRAMARPQRIDALRVAALSLGNIADRQLPAGERRTLGQPTHYKLMAVLALIASALAYTVGVEQGRARCPLGSAVAQTVVQ
Ga0208233_10043833	F100355	AGG	MTKPIPKRRPSPGKRVTGAIYDGVGNSVVVDAYLPADAYEQVKRLQEQTSGTQAAAFRSLIFQGATSLGFKDSVSAMEAVAAANGGASDARAVHHLIRLGAGLNPILSNPTP
Ga0208233_10043834	F050892	N/A	MAAQRCDASQIVMGWAVSWQTVANRGRFWRRATPVRSPIPVITDPRHRELLQRAIDAQTVVADELQSAYNARMALPIDHPQRLETRDLWRDSKALEALISGAHGLLTGNAGAVTLQGRSQ
Ga0208233_10043835	F058936	N/A	MKTATSVLATVPASFRNKRQQPGAAEQQLRNLEQATSDFDLKQLAYGVLYSDSTGRVSGTISMALRRATPWNAAKLIAAMANDGLTLVSEVPYWMNANALSVLS
Ga0208233_10043837	F043833	AGG	MTGPDADTDALLLQIDAGMAAYSASINRGLALASEMRQLADAVDGGMADARAEFDEWW