Scaffold Ga0208233_1001968

Overview

Basic Information

• Taxon OID: 3300020529
• Scaffold ID: Ga0208233_1001968
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3702
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208233_10019685	F010302	AGCAG	MVDVLLNTDDVVVIGPPESIDLLVDIGPQGTRGSKFIVGSGEPNALTANGALFGTTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVRTVTFTSGAGSTTIPISNIVTVSGSPLTASNFNVQFQIEGANPIASSMEIPALAGAGTNLVINFDAVQYSGGTWSALTGSKTVHLFISIV
Ga0208233_10019686	F017131	AGGAGG	MAFPGSYNFSYYRGDRYEFVIRPKTANGGAFDLTGYSANFTVANARGEGKTQYEMQAVVDGSADTVTCTILPGAGEALTAGSYVYDVQIDSGATLVYTLLTGTVTVVDDITGADDS