NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208233_1001136

Scaffold Ga0208233_1001136


Overview

Basic Information
Taxon OID3300020529 Open in IMG/M
Scaffold IDGa0208233_1001136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4946
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004816Metagenome / Metatranscriptome422Y
F023523Metagenome / Metatranscriptome209N
F051731Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0208233_10011361F004816N/AMKFIKYKQVARITLYGFDDLYRNNNSSVFTEPLNSEYYITNVVGGVQVGNNAKRMRFQIKGLDNVKLSEHARFCIESLKVPFLYDADNDVKTIGQIIVRMANLSSINCFDTHGNGQTDPVIFTEQTQASQQRVGTVTNNRIYQNYELSKVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFTGGDFIDLVADQEYFDTFHISFIIYDLDEQELLLT
Ga0208233_10011363F023523N/AMITEQSLDGWDNKPVKFSNVKYPQTKDNNAPQNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEDQEIPQRIILICSTAHSDSNRVFKSLKNLNWDADVIDEYNESLLQDKMHELKYDLDQAKEYKLYKTVYKKFKECKDIDELKDDEMLLLYKYDFKNFKDLDKPKYPDGFVTHYIIDDMIGTNIFKNGKSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKNLYDYATDESYNALVIDATKGKPIFKKNFESILQIN
Ga0208233_10011365F051731N/AMIDTFEYNRSILESLKSFNLLEKKRYEAPRDKRQIKFSNPLPKQIKYRCQEHNTTKNYYKGIAHIDYVKRDTPPYYGLHETGSGSISYKDFFK
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