Scaffold Ga0208233_1000039

Overview

Basic Information

• Taxon OID: 3300020529
• Scaffold ID: Ga0208233_1000039
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23657
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (71.19%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001125	Metagenome / Metatranscriptome	769	Y
F009530	Metagenome / Metatranscriptome	316	Y
F011299	Metagenome / Metatranscriptome	292	Y
F037095	Metagenome / Metatranscriptome	168	Y
F038479	Metagenome / Metatranscriptome	166	Y
F043932	Metagenome / Metatranscriptome	155	Y
F043940	Metagenome / Metatranscriptome	155	Y
F047059	Metagenome / Metatranscriptome	150	Y
F068831	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208233_100003912	F001125	GGCGG	MGDRANFGFKDQKGDTVFLYGHWAGYDMLAKLANAVQAAETRWQDPSYATRIAISHLIGEDWNQTLSWGIYVNQLGDNEHKVPVINWATQTFTLYEEDLETVVFSSSLASFVDKYSRLVM
Ga0208233_100003920	F043940	AGG	MKNRFRVEIYDANKANDLTIYSEQGVDKEYLTELAFSNRGNFLGDVRAYVYDTLKKTKTTALYLPSEVINFNRKNQLTREELGL
Ga0208233_100003926	F011299	N/A	MTRKDYVAVAEILKYASDKAHPALFSKMVNDFAEMFAKDNDRFDVNRFHEASGYHVPKLTTR
Ga0208233_100003936	F009530	N/A	MGELIMTITYSIWQGSKLISIDNVAHEAKAIDNVIQSLNDSELGKVKKFTANVMDIKVTA
Ga0208233_100003939	F038479	AGGA	MTSLTLEQKIAKAAHLIAEGKVVSFRGASFDTYMKVERLANRIKQEQEFPQCPCGECE
Ga0208233_10000394	F000441	AGGAGG	MSDEYLNDQLSKAQALLWGGSETENIEAHNIISKLIKDKIEQVGL
Ga0208233_100003953	F037095	AGGAGG	MAKAKEDLNGDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTSPRDLMLGGFAATAPVILKALNPNEPSFGFTKN
Ga0208233_100003957	F043932	AGGA	MAKKFKSLLNLLTLPEDPLVGLTGDVYFNVTSKNIKIYNGAIWVDLTPASKDPAPFYMHTHAYDGSVHTVNLNETVYFDNLNQNSGVEETIPVIIGLDGGTPTSSYANANYTQLTLLDGGQIGD
Ga0208233_100003958	F068831	N/A	MEAKLATNYPTSKDNLTNPAATESMEGHAALHGTVNDAIEAIENKLGVNGSTDVNSIDYKVSQLEANLATLDAENASELLGLDGNNDLTIDGIENKTAIDSFSKTVYKTAKYSLQIHKSAGNLTSTSNILLLNDGTDVYISESDMVSNTDQTLANVTFEENNGIISLCVTPVSGSVKVRYFRTALKA
Ga0208233_10000397	F047059	GGA	MKIHLISLNQDLEDARNNVPLNEDEYFESDAYYTGAIDTMEHILSVANDIMIDNERVY