Scaffold Ga0208224_1007298

Overview

Basic Information

• Taxon OID: 3300020528
• Scaffold ID: Ga0208224_1007298
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1793
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N
F027823	Metagenome / Metatranscriptome	193	Y
F041755	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208224_10072982	F041755	N/A	MNITAAKMSGEEILAKYPILNTKWKYSNREYNWNGYNGYYYSNYKDWSTEVVTDPWFRELKSNDPIKTTELQTIFSTTVEGNKVILVIYLKTNV
Ga0208224_10072983	F027823	N/A	MNITAAKDVPCVSLTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRGVYDDYDGYYYAYEKDIGTGIMFDPWLREFKVNMTISDGVYKTKMYHTTVESNPILLVLYKKKD
Ga0208224_10072984	F010317	N/A	MKSIYIEKLAEVPGGLPARNMEEHIDGQYQGDSHSIPVEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSTVTEVGDNYFKTKNSVYSYKFL
Ga0208224_10072985	F019468	N/A	MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRMVLSIKDLPTTNPVKPTIPYPYDTYPWYTPKYPNDTGTPYWTGPTTTCGTINAGEGICVKDTNWQPNLCNTVKSSNGINFLSDDMETIKENDKWRSSVQQALDKLSAKTNVTTSDGTTIR