Scaffold Ga0208232_1008049

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1008049
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1679
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F011484	Metagenome	290	Y
F015702	Metagenome	252	Y
F018135	Metagenome	236	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10080491	F001477	AGGAGG	VSNIYTIHPKKSDLILFYEVLTPEGENEWGGANAEQCIQWLSLAPSGSRVLVSAWDSDEEDAHLVG
Ga0208232_10080492	F015702	GGAG	MTIKEVELEYTVYNLVRLSEKVWGENATEYLAGRLESVITYKQMKVLIDSLKEEASE
Ga0208232_10080493	F000821	GAGG	MNEEYLRAKFNLCLDQAEKNIKEEEIALAIKNLERANSAMARLFGLDEGDNNDN
Ga0208232_10080496	F031792	GGAGG	MSYEPELNDPIFYAEEYEPPIKCFKCGDTLDRDDIVWADVEGLWQVKGKEGNDTAWCVVCLPSEGEGNE
Ga0208232_10080498	F011484	GGAG	MKELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMREGERVNG
Ga0208232_10080499	F018135	AGG	MTIERVRHSGAYVISDFVGEGAGEYLFTRTYYGYTLREAKAQFKIALEGEAK