Scaffold Ga0208232_1006336

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1006336
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1931
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F018912	Metagenome	232	Y
F102547	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10063362	F003803	GAGG	MKKDKTLLRFRIYDGDREYTDYAIIDNKQLLNLNYKQIISKFFYDNKVDDEQNLSDGRAVRVESEKLITDTEVEKLEKLGIAFLHDFELDELDEVA
Ga0208232_10063364	F018912	GAG	MAEKRIITEELIENYNRAVINFNESIKKEKRFRQTLCENFMFEWADVIEEIGIRNRKELN
Ga0208232_10063367	F102547	AGGA	MKAKFNIIYVPDTINGKKNIEKKSICRSGMLDEKSKVFTTTSGELAFCYFDLDRNNYRTAKNKWTINLQV