Scaffold Ga0208232_1005230

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1005230
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2150
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029757	Metagenome	187	N
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10052301	F081348	GGAG	MFEKVPYGVKVRVRGNEKDGFIAEYALHTTRFTPFFDDWSLISHYTHTPYTKQDTFPTFELAKEAAMAQYDSWIGFYDRAEETKRI
Ga0208232_10052304	F054874	GGAG	MPNENKGGTFAPADMDLLKRALRYYKDMLVSTEESERNASAELMKVANLLHRIGRIA
Ga0208232_10052306	F047683	AGGA	MTLTVEQIEFTYGVPAFATGQNYYPVLAYWIPIAKLEDVRAAYRAAGTTIRVRYRGPRTVSIGREMIRTDKTTYLRSRHRAMQDCLIADATHFTVYDYTAR
Ga0208232_10052307	F029757	AGGA	MLTLSDINVLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQIEQQQVEQARNFDEFVARVEETMQIVEGATRERAIEIIADAEGISEDEFDFYGLEILEYRFELKFGSISRWLSE