Scaffold Ga0208232_1004165

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1004165
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2443
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010321	Metagenome / Metatranscriptome	305	Y
F020497	Metagenome	223	Y
F076888	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10041652	F020497	N/A	MENLIKLESINVWAGPLGIMPSDENNLPIMEESRSWGSLEAEWFQNLSVEDKELVNEIINKNK
Ga0208232_10041654	F010321	GGAG	MEFDQLQLKEMERLNKALKEKTIQPEDRKKLLQKKFNPQTGELQLFVDNGKGGIKMASVNIFE
Ga0208232_10041655	F076888	N/A	MLIGRNARNKPFVRPPFKGCVVVQGQTYPSYVDSVRKGWEGYQIIFSTWDTTDKSLYNESDIVIYNPIPADVGTKNLNLQKISTINGFLKARELGWDRALKSRSDFSTTTADGLFELFDKTKLNLHGYWDGYINDFYMEGTIDDILTLFDVPPGGPYPEWNLTKQLYDSGLNKKSHCIVNGLEYNSADIKWERMGYWFSSHVGNGIVTSVLPEKWG