Scaffold Ga0208232_1003165

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1003165
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2842
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041732	Metagenome / Metatranscriptome	159	N
F042755	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10031652	F041732	AGGAG	MKFTADQVWGCAAAAQRINGGYFKEPEFAEDRVTVLRTANKTMVKGWLRDEDYSQITAADITAGQTARNHFKSYTFLAIAGRLNEFQTTAMQLAAKEEFTGRDIYDFAVISCLPSVAVRDVANSELRREIYTSEQLQGAVGDAVVGDITVLTARFNPDYAKHKITARMGESFVDFWFGQELKGELRIKGKIKAQRGNKTTQLNYVKIVG
Ga0208232_10031654	F042755	AGGAG	MFDSIVKVTLAIALIVLLLAIGPLLVIWALNTLFPVLAIQFTFWTWCAVVVLGTFFRANVSVKRKD