Scaffold Ga0208232

Basic Information
Taxon OID	3300020527 Open in IMG/M
Scaffold ID	Ga0208232_1001791 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020527 Open in IMG/M

Scaffold ID

Ga0208232_1001791 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3873
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3873

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (7.69%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021979	Metagenome	216	Y
F023789	Metagenome / Metatranscriptome	208	Y
F041197	Metagenome	160	Y
F050949	Metagenome	144	N
F054034	Metagenome	140	N
F067472	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10017911	F041197	N/A	MSITLSNDSSHLTMKGSSKAIIKSSIKIVGTNSVLPIEIVGDFKDIPQNLHQLYMQSMLASYGSVNVHSNTEPMTIKEKKSEWRLNRIVDIISKAISK
Ga0208232_100179113	F023789	N/A	MDTTNTHRLTPVERIELESKIQRLQWLLKECIGIEEYELCSQIKAIIQTKTAILNETQNDGIQ
Ga0208232_10017915	F067472	N/A	MLTIDNIQNIEGKEFQLSSGQKYVIGICRAYYDHYSFGVFPLAVNGVAIINDGIIYKLMRTIRNRRGYEMTSAKLKQNVYVKPENLTLKNFILELHIQTGLLNAYNRK
Ga0208232_10017916	F050949	GGA	MLTIENRGRLISDSFYDKMGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNLYGIGYEFGISAGGPGMQRMYKVKTYIPIETISDKRLLIKRMTEMIDTSYDI
Ga0208232_10017917	F054034	N/A	MLTISTFKKLEGLALKDGLKVESIFEFNERYSIWLSDGTNIEIERNRHWKGGNYTYYKMYIAGGTSAMTEFIMVQTINTLDRMVKHLIYIHEKYINK
Ga0208232_10017918	F021979	N/A	MLTIENINIINSKFAGTPEWQIGEMFIGEQNYIFQIHKRVGEWTIRGVEHKELTVRLHRIKAIDGYIMETGLVKQNYYGRSVYSIEYMRTINSFIFCLDTHIKSIIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208232_1001791

Overview

Ecosystem & Geography

Associated Families

Sequences