Scaffold Ga0208232_1001755

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1001755
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3919
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F058813	Metagenome	134	N
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10017552	F058813	GAGG	MEPMSAPTLVLVSGFARAGKDTLAEGILEWSRRPSRKTSFAAHLKDAANDYLWSLNLEGDFHNEAFKCKHRDLLVTLGKFARSLNPDVFAENLAHFVPIQMGPDEVAPETVVVSDWRYINELRVSQSILWNLGWKVRTVYVSTAGIGPANDEELDSICEIKQFHSFDQEFVFAPNSRQCILAEGRHLAKTWNL
Ga0208232_10017554	F001338	N/A	MTTENNERTPLTSISQNGTYKLKLIRPKGTDKVKVWEDGTASARLFFVDDKGFCLSKNFSTKYGKALAMLVGKFSGKYTNEIRLDATPAEYLEYISPACGQTILVGVEVEPNGEWQGKPQYKYKMTYPRGSQSPVVSEPIPDNPPF
Ga0208232_10017557	F098917	N/A	MTNRDYLRNLLGQLAGEVAALRPTPEDSARIAGDDLYQLQVAINEAAEELARLDAENIEEAYDIKPIYDRVKAVIAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHNPGDDDASL
Ga0208232_10017558	F002038	GGAGG	MADLPKGIEKIAATVRNQYALLLFLDGFPYVEMTARKSADFMTDLNAWKRKTYPSLSRSNVRFFTLAPNGEVKELTFTK