Scaffold Ga0208232

Basic Information
Taxon OID	3300020527 Open in IMG/M
Scaffold ID	Ga0208232_1001652 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020527 Open in IMG/M

Scaffold ID

Ga0208232_1001652 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4052
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4052

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F024555	Metagenome / Metatranscriptome	205	Y
F036239	Metagenome / Metatranscriptome	170	Y
F038242	Metagenome	166	N
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10016522	F038242	N/A	MLTIKNIKQLELNFCHQRGLREITETQNKLGEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLVTRHFVTIDDVKTKGGLASEISKILAKAEHWWKNEVTK
Ga0208232_10016523	F024555	N/A	MLTIKNIEKLYKLNVGNWRIGKVVTLDSSYLMELRKYNSMDTMQVNIERTPIGEGDTALYELWFWSDDSGGAKPIRRLLRKCDFELGPPYVIKNIENMMNLK
Ga0208232_10016526	F019478	N/A	MILKIYNTNRMVDTEFWNGRFRCLRVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRIDNEGDWSYSLNYMRCNQHLITAKWFGDWKNVTKTFGDVLKKQF
Ga0208232_10016527	F036239	N/A	MKIKGWEKISGFTYKGYCIVNPIHDANEEGYFATVLNLNQVYRPKWDITLSAYAVKGVVTFSILDNVTQHLLAKSHLTKTNIDTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSSGSNVLYGSGSSNPFTQAHIIQTLQTLQQQIDDYNKKL
Ga0208232_10016528	F053288	N/A	MITIKNYNSDVGYGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNSKKRTKHVVSEDLHEVYIQDMVSDKWRRTLNLTKPQLNKSAFYNWVESVIDDEYGLPF
Ga0208232_10016529	F022886	GGA	MITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQKDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208232_1001652

Overview

Ecosystem & Geography

Associated Families

Sequences