Scaffold Ga0208232

Basic Information
Taxon OID	3300020527 Open in IMG/M
Scaffold ID	Ga0208232_1001140 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020527 Open in IMG/M

Scaffold ID

Ga0208232_1001140 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4910
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4910

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100114010	F028717	AGGA	MNEDTFVGNEQAPEAMQDQATGNNAEQNVNAGAIRKSTTNSILNALSNASGQNFESVEAALSFMARTSAQQTSGGNAQPVEQQNTDRRSNRVTTNDLHEQFNRLQQDLSMKEQKLRERDLDSEIQRAMGERFDSDLLDYALTKVKSNIEWYDDGTYAIVDNKGRERYGIDGSPLTINGLVNEVAQGNPKLLRQSSGNSGSGLRPGQGGFAGALEEGIPDYTRDPAAFNAWAARNGLGKNVGLKGMKVSATSSAPSRKIL
Ga0208232_10011405	F003807	N/A	MKEQIMNEDNVWLKTDEQKLRSLIADEAKMMPMLDNMQATIKQLKAKQTFRLALLNQLLESSDSD
Ga0208232_10011408	F002260	GGA	MSVPYQRISNATVVDIAFYDPAAERRAAALDVDWEPYFKVGSQEWLYKMEFGWWQNYCDTVIGAYYYDNLPNGQLISSFNPNLLIKNDQTLIRLDCFGAILVFYESLVTDVSNMNEVDLQNYNFAKERAYNEWIKAGELSNWYDLFQDAPNGPTTKLEENWTADPNYFNGDRRYF
Ga0208232_10011409	F011761	AGGAG	MAYVLGGPNNEADGFTTAIASFALRAMHESIGLVNMTNVVTPTQGNEFLVPNFAPITYQDYNANGTGGSWGTGNATVQNPSLGQGSITATPAVASTAFDIFYGWTTSFQLAATLGGELGESFAEKVDQRVTAAFLDFKATPGNEYYGTAPGTTLPADGFQRVLELGAMELLQAGLPSNTSGWTTGFSASEVLELVRNIKQNFKVARMPGAPVIVLDSNGYVTEASNNAIGGSGSSLTRLLAELTGGAVASSGGSNLSALGNELLSTGKIESVYGCQIMFTTFLQSANRIMLGQGSTSPVLVGAYFGDSALFTVMKEGLQLKSGETPGGLQMWLTGVGYFGSGVGDLRRGGAINILQD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208232_1001140

Overview

Ecosystem & Geography

Associated Families

Sequences