Scaffold Ga0208232_1000682

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000682
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6591
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055287	Metagenome / Metatranscriptome	139	N
F078639	Metagenome	116	N
F080647	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_10006822	F080647	N/A	MIETLLFTSLFIFGVWLSTAEGMIGDQLRWEFISLWPNLAKPVIDCPTCMASVYGSLAYWGQHMISGNTTDLLTFIGWPIFVVCLAGLNGIILKLAKWS
Ga0208232_10006825	F055287	AGG	MNWLGFISRHYGLIAIAAAFILGKQSCNHMAEAERHKSNYEAIQQTTGSTARRLDLTVEQLAAENKRLLDSLKIKSGKVEFVYRTKWRTKVDTFEVEVERWHIDLIPCPIQSFTVDTNCIKLTAFLHPDSAAKVTLTTDYDLSVVGYWQRPGKWFGAKLWNGLLGKKEAYIKIASPCFKDSAVYLNKFSQAQ
Ga0208232_10006829	F078639	N/A	MNTNKPITVDGVTYNKVAASLSSMPLFNATEVGQTVAMRLQYFATDEAGDVLRPENPSQYDVPIVFGDVLTSQDADALKAFAKISEAIQEYINAKGL