Scaffold Ga0208232_1000571

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000571
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7302
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F001531	Metagenome / Metatranscriptome	676	Y
F006739	Metagenome / Metatranscriptome	365	Y
F008808	Metagenome	327	Y
F018684	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100057111	F018684	AGGA	MEEWKLQVSYKTPAGDMINVRANTADELSVLLEGVGDYSTQVAAVQRLVVGAYNAAPLGTTPSTPSTTQFTSSAPSQGQGPSLTPPPSAVTPSGTASPTCIHGARIFRQGVSKASGKPYAFWACPTPQGTPDQCKPVN
Ga0208232_100057118	F006739	N/A	PVYCYDVETDRYNVQVGYEGRAFDRIAQLESIEENGDVVTWQDLTTGESRQAVIEQISFTRLTPPDRGFTGYGGVIDITIRTV
Ga0208232_10005713	F001531	GAG	MNWQQIEPWEYVITAVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGNKDAKNLIYRSLRNHALDYCQRWKAKSVGYDVSDIYYYEADVVEALLPAVLRSEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAVKRLVNKLGGFKPFYDNDIMEPTETEPSEDSSYQELGTPQESEQ
Ga0208232_10005714	F001515	N/A	MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKRAKADELATN
Ga0208232_10005716	F008808	GGA	MKNKINPCPECGQHFDNVFEATDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYAEQPEQIRTITQDTYMTLFSAETDPGTVLEVIEDMIVGSSMVGIDDELKQLLEDGE