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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020527 Open in IMG/M |
| Scaffold ID | Ga0208232_1000400 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8921 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (45.45%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001964 | Metagenome | 610 | Y |
| F003748 | Metagenome / Metatranscriptome | 470 | Y |
| F010673 | Metagenome | 300 | Y |
| F016253 | Metagenome / Metatranscriptome | 248 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208232_100040010 | F001964 | GGAGG | MSRNLFAKPVYKVQLSGAIGWSDMKEKVVSYQTVEFSSRKDAERAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERIQS |
| Ga0208232_100040016 | F003748 | N/A | MFQVNRKDAGGRYIDAEGDYTVTVAKVEETLDAKGREVCKVTFKTEDGASITDRYINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLELLITARSEEYQVNGETKKTLRIKNMREVPIAQVDADDLDPKPF |
| Ga0208232_100040018 | F016253 | AGGAGG | VSDRIKSIIDGGTGVYTITKKEAGEIHKAAKKVKNYAFSYWTRNRKAREAK |
| Ga0208232_10004005 | F010673 | N/A | MNPKLLPIIERIIARETILLSFHADRLPQSALAYIRQNYRMDSFLSDEEQDLIETLAPFADDIADSFREDESSDASKYHLFQDGSLWLRTNAYSSIWADARDFAVEILLPRMELSRMDADLLRAIDMEDAVESVRADFYSSFAHILNRDCGIPYCDAREHWNAYARQLSDSACEAVVLGGSESGRKEGERFAESFTVKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |