Scaffold Ga0208232

Basic Information
Taxon OID	3300020527 Open in IMG/M
Scaffold ID	Ga0208232_1000309 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020527 Open in IMG/M

Scaffold ID

Ga0208232_1000309 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10509
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.64%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10509

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.64%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F014605	Metagenome / Metatranscriptome	261	N
F049637	Metagenome / Metatranscriptome	146	N
F084121	Metagenome / Metatranscriptome	112	N
F093739	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100030912	F001775	GAGG	MKDLLDDERKRIAIIAFLIGVLLTFVIYPKPEQETVYKYETVTKTDTLMVEVKDTVYVPKKWIKSQIIRDTILVDYKPQISLFKTSIPSEYGSTNVSGEVLGEVLKMTATNDFKIPVVINTITETKTETIIKKSKGIYLGASVNSLLQPGAKVSYLDNKYIFEYQYQPFTRSHQIGISKKLF
Ga0208232_100030917	F093739	N/A	MKYSTEQIKRAVRSCVCCQNNGLKVHLDMEDHTEAGEIFFNHFSGIVEPRLTELLENTRYVIKLQLITRHLQHNYK
Ga0208232_100030919	F084121	N/A	MPRKKATTYHSKFILKRRFITKFNEFTDWQDIGYGEFLSIEDVQDKIKMLIQNYKNKHIEVHFEMNGKLLDFNGNEISHPIKFTPK
Ga0208232_10003094	F014605	N/A	MIVNLAIALQDIEGNKITSENGEFMYLSKMVGNALFSAEEKDDPIRLYELAKKIYYSDGDIELSKSDADLVKEKVKAKGFTVLVLGPLYEALKEK
Ga0208232_10003095	F049637	N/A	MNILKSDELGVPSTFLAIFANVTAMAGLQMVNVVFTSVISILSIVYLVYKIINESKKLKNNGKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208232_1000309

Overview

Ecosystem & Geography

Associated Families

Sequences