Scaffold Ga0208232_1000027

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000027
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38876
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (78.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F010612	Metagenome	301	Y
F012001	Metagenome / Metatranscriptome	284	Y
F015719	Metagenome / Metatranscriptome	252	Y
F020684	Metagenome	222	Y
F054561	Metagenome	139	Y
F056557	Metagenome	137	Y
F058945	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100002710	F012001	AGGAG	MINKEKAKQIALSYIRAAAAAAVALYTAGQRDPKVLAAAFVAGLVGPILKALDKSAPEFGLTK
Ga0208232_100002731	F058945	AGGGGG	MECDHKSKVLDWAYELKDGQMNQYVSLYGCTECDATSPKPFITKEEVFQADHSNCDANPCFGCKAKGLQLSTGDANGRASMPMRKWEGELEAYRNARRQGIQPAGTTMNKIVAAEKASENLGRAYNAEKDPNAKHIDKKTAKTINELGA
Ga0208232_100002743	F054561	AGGAG	MNNEIIVQNQLTLMNECFNCLQLNELCADCLEAKEARDAVIANQMVDEDIYRYKPMYSSMTKIEDEPSAHEWIGSEVVTHVNPKTGEKTIRTEFFEQSSWLIDRIFNLDDSMELTKHECICSVCHYTINKHAVCPNCA
Ga0208232_100002745	F056557	N/A	MTRTGDSMYLDTGTMIGIIIALVVCMLTIGYSIYIIKTQNEIIQRMSDARATRRKMER
Ga0208232_100002746	F010612	AGG	MSQPLMTSPKIRTSPMLDEDTPQWEHTVWILAKVRCRTTHINIDTAGDEALDDPSEWHVLEFDKGVKHSQEIVRVK
Ga0208232_10000275	F008296	N/A	MNQEWVQEYDLLVSTLGMEYSRKYSIVEPSDIKQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAALKYCEQEKARKFGYDMVDLYYYDPSVIEAFLPSILADSYEIPSKIQDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNKLAEAKQNILRLRFTTDNYEWNDLAKELNTSADGARMRVSRAINSLIRVLGGWRTYSDTDNLEAKDEEEEDDTRA
Ga0208232_100002752	F015719	AGGAG	MTMYYTEVDGTEPTVSTQVGGIKYTFTNESLTKLIEEKEQLKIELAQLERKFRSARFDVREFFQSRYETDSDEIVCEVDDVNNLLINLETEALTRSWSATVTITATVTGIEAPNAEAAQEILDDAFEVNLTIDGDVWVDDVSVESVHAES
Ga0208232_10000278	F020684	N/A	MNRLYSLTPEEEAIAVEVGYQRQKPYFGDPTRNINYSEGDLWELWQHVVAAGSELAFARIIGNTTFIPHFNKWKNELDIPGLGEVRYTFNDQPKLRYTNRDNDSLIYILMADGLRHKTRRTAPDWLGVPYKAIGWLYGSQCKVDMFKYNEKSWYVPATYLSSMDTLPLEQYVKTI