Scaffold Ga0208232_1000015

Overview

Basic Information

• Taxon OID: 3300020527
• Scaffold ID: Ga0208232_1000015
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56484
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (22.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093376	Metagenome	106	N
F094908	Metagenome	105	N
F096897	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100001515	F096897	AGG	MSFTVIDGELAVLRDGEIEYVFERDSFSRAAYNYMIRWIQDKKSPEDDPGMMWFEAEKAWDSLSPEIQGTLVSISNKEKQQASDIRDGLLATLHGYQGLKTIKDAYAECISGCFSQW
Ga0208232_100001533	F094908	GGA	MNDPAFRRNFTGCLGDYDITKCRRIIHPKGTLYTPISDEEGHFMAYEFIGSKIIRVFDPAHPMSRYSGHLDRDLISKLSGRQVVVCRDHPQKHEEDTFCATWTLVWLRPDLRHLTKSN
Ga0208232_100001553	F093376	N/A	MPSSVLQPGLLMVEEGMYFGPKNTNYEVMVMTDDALRSQMTSRNNKYYADKPYDFPELYIDKPVNKFMTWDPTSTYAMYQSASYAKRYPTDK