Scaffold Ga0208085_1001740

Overview

Basic Information

• Taxon OID: 3300020526
• Scaffold ID: Ga0208085_1001740
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5281
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032962	Metagenome / Metatranscriptome	178	Y
F056345	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208085_10017401	F056345	AGGA	MVFVLNRQRGISLATGIERDLNQCQIRVGGKLVGYLPFGESPQIQAIFEFPHDALTADEIASLEMQLEAIQGYPAKVQPPEQVSRTFVKAALEAIAQAKDEEDDE
Ga0208085_10017402	F032962	AGGAG	MAALTVADTGLGATISGTSLITTQVVSIGEMTISVDSLDITSLDTTGFEALRPSDLRKNPEVDVVFNWLGAAIPFAATMIPTSEPYAGTSVTITLPGAGSFQGTAFVKEVKTPKLAKGEVMKGSYKLQFDGATDVTFTPA