NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208858_1006424

Scaffold Ga0208858_1006424


Overview

Basic Information
Taxon OID3300020524 Open in IMG/M
Scaffold IDGa0208858_1006424 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2059
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023332Metagenome / Metatranscriptome210Y
F078423Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208858_10064241F078423N/AMPDLPQIGAIDDGFVGVVSRIDPALIPASYVSNAVNRRFEDQVIKNRWGIVQPKWGGRWSSGSRIVTLTSGSSVGVPVSGTQIPANSQVVCDVDANTQIFSNGTLCTLDDNTNATFSTAAFSFAPSPANKTVQFYASTAPFEDILGVLQYRDPDTGANALLVAVNEERSSDGGQGKVWCIRPNQSPVEVPMNGHDIYLPVRLIQATNGVVMLRPGNARYYFDSVTGIVYDSIDTEGNDAILCENSFLLSQEASTEITLNVVPDLATGDIVNVGQVGNAAPLWNASPGSGQGFQLYVNVVNQEVSLHLTLADARAKTNSLPLNPENNARYYIELASNTTGYDLAQDIVNNLNDGMPILMQSTATNPSALDAGFNRIPSTLSINSSDATADTIAVFNHNFIPGDQVTLTNIENGGANVTNKIYYVYPVDNNTLRLFSGTTEETDSLNDANRA
Ga0208858_10064242F023332N/AMSSVHLRTLNPDGTTRAVPIGETFSVWPGDPRVSWRQQEATYTFTDNGVLVGDQLPYVWLEFRKTPPLLSSSAEATAYAFPYRFSEICSLKAAGQMLRVDGKIDLGNQFLELGEVELSKEIDKVALQEKYVRQIIVPSR
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