NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208858_1003253

Scaffold Ga0208858_1003253


Overview

Basic Information
Taxon OID3300020524 Open in IMG/M
Scaffold IDGa0208858_1003253 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2943
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F007644Metagenome / Metatranscriptome347Y
F050377Metagenome / Metatranscriptome145Y
F085700Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208858_10032531F085700AGGCGGMAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNSLRLKSEWDKGYTSEGLLLADALNDMIEAKYGAVDRNLTIKSLEETRVRDSKYIMDLDSF
Ga0208858_10032532F050377AGGAMSTPTTTREYLKAQGITVGKRGRFSAAALGVISKAAQEGVVFTDKKNVK
Ga0208858_10032534F000441AGGAGGMKMSDKYLNDQLGKAQELLWGGSETENIEAHNIISKLIKDKIEQVEL
Ga0208858_10032537F007644AGGAGMLTRSSHFLEYMKLHLISLEQDLEENPMSLHVVDIEGQIYATKHLLSVATDIMNSSNERY

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