Scaffold Ga0208858_1002352

Overview

Basic Information

• Taxon OID: 3300020524
• Scaffold ID: Ga0208858_1002352
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3466
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_100235210	F044325	N/A	MKQLIQKLLFGYRSNPAAYTPKGGAKLTYKGGNAEAIHSALVLMQYQIRNAKN
Ga0208858_10023522	F049410	GGA	MTRNTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKNDLILPLVEWNLKGKFEWEII
Ga0208858_10023525	F041191	GGA	MKLLYKPTKLTCEFIVPDIEKSDGVQKVIGFSKGWHHYNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYSIGDLVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLNSYAEKDGVEGVEVPFDIEIINLKINC
Ga0208858_10023526	F062749	N/A	MKTKASLILWAAAALFMSFWAVKFAMTGVFFGNSEVLTFTLSFCASLVSAVCGAGWMQQWMKK
Ga0208858_10023527	F102493	N/A	MTTTTFDLIWDYQDDDRENNIKGGSVFIDATYGNKKVKLSAKLEELINEELNPDNF