Scaffold Ga0208858_1002184

Overview

Basic Information

• Taxon OID: 3300020524
• Scaffold ID: Ga0208858_1002184
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3591
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F004279	Metagenome / Metatranscriptome	445	Y
F006539	Metagenome / Metatranscriptome	370	Y
F082673	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_100218410	F082673	N/A	QHYIAMNEIYKAAKKAGFNESCALYFVSDRATMPDWVIGDGGIIPSIDPTEEGED
Ga0208858_10021843	F000141	GGA	MHAQFKCNGCKGKTEFLWLEQLDTPEGFKAYQCMECGCVGVKNIAEALHIPDSSIDRCAKCGGWQFLNTGCHTCALIEAR
Ga0208858_10021844	F004279	AGGGGG	MGYIEVLNGSGFTLRMENDNESLNPSTERCVACNDDRLIHSGNFLVCTQCHCRQ
Ga0208858_10021847	F006539	GGCGG	MIETTAPWIVLYSVLGYLIVWGVYSTIKDNAFQAGYWRGRKDGYDMHRRITDSKTNADNN