Scaffold Ga0208858

Basic Information
Taxon OID	3300020524 Open in IMG/M
Scaffold ID	Ga0208858_1000476 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020524 Open in IMG/M

Scaffold ID

Ga0208858_1000476 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7587
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7587

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (64.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005503	Metagenome / Metatranscriptome	398	Y
F005946	Metagenome / Metatranscriptome	385	Y
F016643	Metagenome	245	Y
F025279	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_10004761	F005946	N/A	FTAATAAADRTYPLPFIPSALATLSGSSAAQLYASTPPIENAILVVSVEIFQSITAPGNQIMADNFQPSPFVLGRSLTNRVVGLLGPFLDVEAMCQ
Ga0208858_100047613	F005503	GGAG	MTTSEIGLFVLMAIACILWAICSYAVGYKEGHKDGYQRGRAVGRHISAKAAR
Ga0208858_100047614	F025279	AGGCGG	MAFMDNYEGNKERTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAFRNQLETEPAGVDYAHGFLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMAIVKTETPAADYDYWTTKHGDVPSYKTREEAEQAEPIAWEIP
Ga0208858_10004767	F016643	N/A	MTIFNPVWRVKIAGIQYTNYVLANLSTTSGRTNIYEQANAGYVSLELINLDQSNIDIEINDSVTIELQDSTATFVPIFGGTVVDLGIGIAASGVVGINQSVRITAVGALARLPKALTDGVLSQDFDGDQILTILTDLLINSWNEVPAALTWAAYDPTEQWQNAQNTGLGEIDTPGSYELAQRSSSTIDVYSLVSALATSGLGYIYENAQGQISYASADHRSIYLATNGYTDVSAAQALANSLFVQTRAGDIRNEIVLKYGTNSNSEVTDSDADSILAYGKLAQIITTTVKHQNDAEDQAAFYLTLRAYPQANFNQITFELTNSEIDDADRDALIGIFMGLPLRITNLPLNMASGTYLGFVEGWSWRASYNSVSVTAILSPLAFSLQAMQWQDVAIAEQWNTISGSLNWADALVVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208858_1000476

Overview

Ecosystem & Geography

Associated Families

Sequences