NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208858_1000476

Scaffold Ga0208858_1000476


Overview

Basic Information
Taxon OID3300020524 Open in IMG/M
Scaffold IDGa0208858_1000476 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7587
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005503Metagenome / Metatranscriptome398Y
F005946Metagenome / Metatranscriptome385Y
F016643Metagenome245Y
F025279Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0208858_10004761F005946N/AFTAATAAADRTYPLPFIPSALATLSGSSAAQLYASTPPIENAILVVSVEIFQSITAPGNQIMADNFQPSPFVLGRSLTNRVVGLLGPFLDVEAMCQ
Ga0208858_100047613F005503GGAGMTTSEIGLFVLMAIACILWAICSYAVGYKEGHKDGYQRGRAVGRHISAKAAR
Ga0208858_100047614F025279AGGCGGMAFMDNYEGNKERTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAFRNQLETEPAGVDYAHGFLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMAIVKTETPAADYDYWTTKHGDVPSYKTREEAEQAEPIAWEIP
Ga0208858_10004767F016643N/AMTIFNPVWRVKIAGIQYTNYVLANLSTTSGRTNIYEQANAGYVSLELINLDQSNIDIEINDSVTIELQDSTATFVPIFGGTVVDLGIGIAASGVVGINQSVRITAVGALARLPKALTDGVLSQDFDGDQILTILTDLLINSWNEVPAALTWAAYDPTEQWQNAQNTGLGEIDTPGSYELAQRSSSTIDVYSLVSALATSGLGYIYENAQGQISYASADHRSIYLATNGYTDVSAAQALANSLFVQTRAGDIRNEIVLKYGTNSNSEVTDSDADSILAYGKLAQIITTTVKHQNDAEDQAAFYLTLRAYPQANFNQITFELTNSEIDDADRDALIGIFMGLPLRITNLPLNMASGTYLGFVEGWSWRASYNSVSVTAILSPLAFSLQAMQWQDVAIAEQWNTISGSLNWADALVVA

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