Scaffold Ga0208858

Basic Information
Taxon OID	3300020524 Open in IMG/M
Scaffold ID	Ga0208858_1000285 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020524 Open in IMG/M

Scaffold ID

Ga0208858_1000285 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10412
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (93.55%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10412

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (93.55%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F009530	Metagenome / Metatranscriptome	316	Y
F039631	Metagenome / Metatranscriptome	163	Y
F043940	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_100028510	F043940	AGG	MKNRFRVEIYDANKANDVTIYSEQGVDKEYLTELAFSNRRNFFGDVRAYVYDTLKKTKTTALYLPSEVINFNRNPKLTRDELGL
Ga0208858_100028526	F009530	GGAG	MTITYSIWQGSKLISIDNVATDVKAIDNLINALNDSELGKGKKFTANVMDIKVTA
Ga0208858_100028529	F039631	N/A	MLCLRYKEKQIKERWSQMTTLDKNTIKHSRFGHLDLEQRIRLGAEMVANGELVSFRGASAETYNKVMTLANRIKQEREFPQCPCGECD
Ga0208858_10002853	F001125	GGCGG	MGDRANFGFKDQKGDTVFLYGHWAGYDMLAKLANAVQAAEPRWQDPSYATRIAISHLIGEDWNQTLSWGIYVNQLGDNEHKVPVINWVTQTFTLYEEDLETVVFSLSLAAFVDKYSRLIM
Ga0208858_10002855	F001043	AGGAG	MSDYKDGWDDGYKFAREEIMEKLSEIDINDIDSWILDRLSEMIEGGSL
Ga0208858_10002856	F000311	GAGG	MYFELTAPNRLSMEMAYWDAQITGLDPQVMSPLTFNIGTGSIEKVSRIRDKYNLTESYISDYETTGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208858_1000285

Overview

Ecosystem & Geography

Associated Families

Sequences