Scaffold Ga0208226_1005775

Overview

Basic Information

• Taxon OID: 3300020523
• Scaffold ID: Ga0208226_1005775
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18MAY2011 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1913
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208226_10057751	F102493	N/A	MTTTLTLTLHFDYENDDRENNIRGGWVLTDITNGKTSVHLSPKLEQLLNEELDPENL
Ga0208226_10057752	F062749	N/A	MKTKSSLILWAVAALFMSFWAVKFAMTGVNYDNSEFITFTLSLCASLTSAVCGAGFMQQWMKK
Ga0208226_10057753	F041191	GGA	MKLLYKPKRLTCDIIIPNLEKSDGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRIGRYQIGEVVKCALSWGYYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPLNIEIMNLKID
Ga0208226_10057755	F049410	GGA	MIKGTRYTNGTEVITFSKIDFIVIGGRKIDHVYFRRKNKVDLIMPLVEWNLKGKFEWLIT