Scaffold Ga0208226_1000743

Overview

Basic Information

• Taxon OID: 3300020523
• Scaffold ID: Ga0208226_1000743
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18MAY2011 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7485
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042157	Metagenome	158	N
F049410	Metagenome	146	N
F068425	Metagenome	124	Y
F071219	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208226_100074311	F068425	N/A	MGMGAKNNNMKTQYQLITFAILCLLLIIGLNHCAKEKPKTIPFDYKAEAEMMKKQFGIEQAILLNQLEAVNRRLQTANNAKDSIRQREISLSNTNIALLKKLRDRLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCDSASTIKDSLIVGYKAENVTDSTLLVISKQETKQQRRGKIAAWCVGGAMFLLWLVVGLK
Ga0208226_100074312	F042157	N/A	MNLKQKYRSPDNRQLKKIADYLIYVLLPFIQTSLALAETQGLISLKQAFWGGLAATFLLINTKFLTKFTTETPTKTAVIDGDGC
Ga0208226_100074314	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLLEWNIKGKFEWEII
Ga0208226_10007435	F071219	GAG	MIHSHHPDNSILVIITSIIIQAGVWTSDWFGNMNLVGIYDTIYDFAKLGALVVSMWASYRVAKKNKND