Scaffold Ga0208226_1000152

Overview

Basic Information

• Taxon OID: 3300020523
• Scaffold ID: Ga0208226_1000152
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18MAY2011 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21898
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (2.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006215	Metagenome / Metatranscriptome	378	Y
F006840	Metagenome / Metatranscriptome	363	Y
F050137	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208226_100015219	F006215	N/A	MEVTGYKYTNEQDAINARETCDTYYGIPVSPEDVTQNWVEYQTATLDNPIFYYIRFDESLKVVLGEPINFEVTTPPPFEV
Ga0208226_100015222	F050137	N/A	MTILNWLYWKKQQLIKTKANNAKTDLIVLGAEVPFTKRDDGYQDYAMTLADATQSGCAANTKHYELDITATSVVTVNTTRGIIDILGMGSSAPLTPAAAFASSVSFIIDNPDLDLTIPNRDNVYVQYSVYYKNTITDNAIPYLISTGIATGLEFNLYNANPTLAGANNWDGALYVYYELYTLN
Ga0208226_100015229	F006840	N/A	MSMFKKLRGRTILVSVPERKKSGLELSAKDEEAIMADAAKLWSRLTVFAIGDKVEEVEVGDQVYVRTGALNMEHVERIDIDGSVKLVLNEGDVVIIW