Scaffold Ga0208327_1002196

Overview

Basic Information

• Taxon OID: 3300020522
• Scaffold ID: Ga0208327_1002196
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26JUN2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3661
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007112	Metagenome	357	Y
F019826	Metagenome / Metatranscriptome	227	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208327_10021963	F007112	GAG	MHTLHYIAVEADNKQQAFDKVVVSLSREDGYSPADWSDWHVVGGGRWSTNANKESENNLMGGYNDDPTDVLGFSEDKEKFQETVNGIAKWKAEAVNRAIKTIDTDRFISDLVDYASEGGRPGNHFDGNKLMNIYAIKEAANMLMGSWIPDSGFYDLEENIAEVIYLKERLDKPEQASLQYLVPVDFHF
Ga0208327_10021968	F019826	N/A	MRLMRRSIRLAVSKEEKIANRITTLLSDFTLDLEAIGFYLAKGSPHIIYSRANEVLESMQYNKEVEQLDRGAYYGNGR