NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208327_1002196

Scaffold Ga0208327_1002196


Overview

Basic Information
Taxon OID3300020522 Open in IMG/M
Scaffold IDGa0208327_1002196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26JUN2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3661
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007112Metagenome357Y
F019826Metagenome / Metatranscriptome227N

Sequences

Protein IDFamilyRBSSequence
Ga0208327_10021963F007112GAGMHTLHYIAVEADNKQQAFDKVVVSLSREDGYSPADWSDWHVVGGGRWSTNANKESENNLMGGYNDDPTDVLGFSEDKEKFQETVNGIAKWKAEAVNRAIKTIDTDRFISDLVDYASEGGRPGNHFDGNKLMNIYAIKEAANMLMGSWIPDSGFYDLEENIAEVIYLKERLDKPEQASLQYLVPVDFHF
Ga0208327_10021968F019826N/AMRLMRRSIRLAVSKEEKIANRITTLLSDFTLDLEAIGFYLAKGSPHIIYSRANEVLESMQYNKEVEQLDRGAYYGNGR

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