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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020521 Open in IMG/M |
| Scaffold ID | Ga0208482_1000331 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 26SEP2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15546 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000888 | Metagenome / Metatranscriptome | 847 | Y |
| F018918 | Metagenome | 232 | N |
| F028783 | Metagenome | 190 | Y |
| F034555 | Metagenome | 174 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208482_10003311 | F000888 | AGG | VSAQYFAQIDDNNVVTDIAVVHKAFLEANPDRYTGTWVETFFNQNDKTYAGIGYTYSYETQDFTAPPKPDEP |
| Ga0208482_100033110 | F018918 | AGG | MAVYSVQQKYLTDNYAVIVLLTNADPLEVGQSVTIASVDATFNGTYTVVGLPQYYFTGVDDQGFFVYDIEAPIANQVLYAKTADNVNIVAATGTLTTTPVCTWITAQQIEDWLGIGTATAADTAFLTTCALAANSFAYRRRQEAGYRNESLTTVPNGSVSLGTIMYGGALYRQRGGVTDFATFDGLGTGGTMGLSPMIKQLLGVDRPAVA |
| Ga0208482_100033118 | F028783 | N/A | MTRPYTAVKAPVASGPLAGNDEFIRQVVKRSMGSLWNNGSWVVRDIRTKPGQLSNHARGLATDFSYRKMTDKGLVDGRKIAMPFIYKLLENADVLQIELVIDYHENRSWKCDRGTWIKGKWSGGDWFHLEISPAMANDANLVKQAFQQVFKDMPQTV |
| Ga0208482_10003315 | F034555 | N/A | MSSPLTLQISDVQKTLAELNKFDKVYRREITKRIKGAGTEIITTARQLVGDAPPLSGMARGKLIKGREVYWDNKSVKAGFKIKVGRRGSRGGTVQFKDKFDAETNPRESHSVTFGARPYQLMVAQQTDAAGAIYDHAGIKTKSQFVTNLNVEVGSQPRAIDPAVEKNRKTVEFAVVEIIDEVTKVLNKNLKARYGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |