NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208481_1005272

Scaffold Ga0208481_1005272


Overview

Basic Information
Taxon OID3300020520 Open in IMG/M
Scaffold IDGa0208481_1005272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2622
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004816Metagenome / Metatranscriptome422Y
F009252Metagenome320Y
F029658Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
Ga0208481_10052724F029658N/AMINLGRAVGLFNRFSPKISKGIGQVANIARNVGQAVQNVRNIGSTVNSMSGGRIGSSPFGQKIQEITNKVESGANFIANNEGKAQGLINDISRKINA
Ga0208481_10052725F009252N/AMDKINIYINSKNRSENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIEGFNNMFQIVMCNMNDEITSIFDYTLQDGNPNVNDVRTNLNGLLLNKVVVSYDRIRNKFLYKRTLPITTDNFKMYLRIINSEDFLGFYKSERDKLILLPYLNNIYSHSIVNISGDEAIIIKIAGDCILSGNTIDNFGLTTYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRISNIEQITYFELSVHNQDDEFIPNFSDYILLLQFIRHTTEDNKTNSLLETLIDYVKQIYLIISQIVFPPS
Ga0208481_10052726F004816N/ALRDNASSVYTEPLKSEFFTQNINAGVQVGNNAKRMRFKIQGLDNVKLSDNARFCMESINVPILYDGNDDRKSMGQTIVRMSNLSSINCFDTHGNGQTDPVIFTAQTHPSQQRLGTLTNNAIYANTESSPVFYNPYPKMLYNFPISRNFLNNRFFDFTFIMQFMPRDFIDLTDDQQYFDMFHISFIVYDLDEEELLLTSTQDVDFKKFGETLPRKI
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