Scaffold Ga0208223_1006345

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1006345
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2061
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F022414	Metagenome / Metatranscriptome	214	Y
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10063451	F022414	AGGCGG	MSKTQETKLAEQLANLADDHWFNPAIFGRYLAEQPLYTIDRVMEMVAHIISEQAKVYHLQRVRGTSSEGLLLANELNECIKAYQEMNVINNLTLPKSVVYNIKREVKVEPRPFGYTDIDK
Ga0208223_10063452	F000852	AGGA	MTTKREYLKQQGIAVGVRGRFSGAAKVALQEAASKGITFTAETPVKKAK
Ga0208223_10063453	F000441	AGGAGG	MKMSDIYINDQLSKAQALLWSGSLHEVDEAHNIVSNLIRDRLEQVSN
Ga0208223_10063455	F001019	AGGA	MLSYEPSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEA
Ga0208223_10063457	F092053	AGG	MKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYERLVEIYKVAFKEGAKK