Scaffold Ga0208223_1005762

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1005762
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2197
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F048267	Metagenome / Metatranscriptome	148	Y
F049575	Metagenome / Metatranscriptome	146	Y
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100576210	F013514	GGAG	VDSIEEIQKYLDDNNITFEEYMRENMITDEDRKYFDKIWVDAIYKNLGEDT
Ga0208223_10057626	F048267	N/A	MTDEEWETTLKSMNEGVKKWVNEEIDKIKYNVVKEIIQRETKND
Ga0208223_10057628	F072267	GAG	MTEPTLKIGPSGYKLNPEKLKGAPQSILPYVCGAFYYTEDFEYFDVIKPYLDIPEKPKTLEEISQEFDEKIDKRIESIKHKFAELKCHQEYLYNQRFNRIIEDFEYAKKNGQFPLKPKFTIGTTLSANSNITSTFVIKQGNKHEGYYTIGNGYLRFYMPYKPNAITRWFMNKCLSIRWVDEKND
Ga0208223_10057629	F049575	GGTGG	MTKLSAADLMVIHNTLYKSLSVVGNSIWTQETRERVMDKVSIIMENMNAEVVCGDVEPIVVSGDVGG