Scaffold Ga0208223_1003089

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1003089
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3273
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F057380	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10030891	F009961	GGAGG	MTVDYKIDAMFELRKFLWAQLKLTGMFNQNDYYSDNLGAEIIPIVPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSTDVTEIYEMRNLMTDLFRRMDESAKDVNASKTSNKLIFHSIHITETSP
Ga0208223_10030892	F012456	GGAG	LDSSVALLQASSGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTSNAEFKNLFKTTIFNQIEKDFGQYVDAQARTKPKSLHHVYEWNKTGNPSFRLFDLYLIDTGGLSFRIGRDFKLSKSAVPSKNKKQKRKYVFSNKATVMEEGMPVVIRPKSAERLVFELDGATVFMPKGTSVTVKRPGGRAATNQFALTYGRFFGGQLVNSSIRSSGFQRIFNAKIAKALNVPINIKKVQYSFSAGKIRMQADAALSSSFGGSL
Ga0208223_10030894	F057380	N/A	MAEIYVNSNSPIRTKIYWEGELITPSSVVTAKIYDVTKDPTNVILPTTILLTINATAVETDIGTYQIVLPFSYSSYPRNFKIVWQYTVSGGAVGTHTTYANVVSPYININEQIDDLNFGADPSDPNYKTYGDLQAAERYARKIVEDFTNQDFYLYSGEESIYGDDSDTLPLPAKLNKIYKIYSNDILLVDNLATPKVNNWLYDPIVSETGFGVRVNRTNLLDNTVYVANGLVPPSINDTFNGVFSKNIKYKIVGQFGWESVPDKVQLATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNASASKGTGNLYVDQLLNPYVITQMVLI
Ga0208223_10030895	F001106	AGGAG	MSFETLKVAELRKIAEDFAVDTDGIKSKADIVAALAEEGVTWSVYQKTIKDIEDSTDEFSENAEEILPRFDPNAQPEDTVLVRMTRENFRYDINGFTFTREHPFIAMTEDNAQEIFDKEEGFRLATPKEVQEYYN