Scaffold Ga0208223

Basic Information
Taxon OID	3300020519 Open in IMG/M
Scaffold ID	Ga0208223_1002315 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020519 Open in IMG/M

Scaffold ID

Ga0208223_1002315 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3886
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3886

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N
F027823	Metagenome / Metatranscriptome	193	Y
F029718	Metagenome / Metatranscriptome	187	Y
F041755	Metagenome / Metatranscriptome	159	Y
F063401	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10023151	F063401	N/A	RNIVHIIYPCEKVISFIHESDDTVDSILESAFAMFNHGSGVESEMFLNSKCRSLSVNDIVAVNGKYHLCESFGWKEVTAEFVNDLEEEVENNPLTLAHGPWFGLSEVMFNRKSNNKLELV
Ga0208223_10023152	F019468	N/A	MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNVPPYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPKHPNDTGYPYWTGPTTTCGTINAGEGNCVMDTNWQPNLCNTVKSSNDINFISDDMAVHEDNQKWRSSVQQALDKLNVNKKV
Ga0208223_10023153	F010317	AGAAGG	MKKIYIEKLAEVSGGLPARSMEEHIMGKPNYDNYSSIPIEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSRVTEVGNNYFKTMNSVYSYKFL
Ga0208223_10023154	F027823	N/A	MNITAAINIPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRDVYDDYDGYYYAYEKDIGTGIMFDPWLREFKVNMPISDDVYKTKMYHTTVESNPILLVLYKKKD
Ga0208223_10023155	F041755	N/A	MNITAAKMSGEEILAKYPILNTKWKYSNREYNWNGYNGYYYSNYKDWSTEVVTDPWYRNLINNGNPINTTESESIFFTSVEGNKIILVIYLKTYV
Ga0208223_10023159	F029718	AGGA	MKFKVSYYDYDSDKYVTKDCDRMDFSNGDYQFSFYPVDNPVKIYKAITIDHPKIKVQQNQRWGIKIIVTGYQCMKDGDYWKTDTTFESVKED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208223_1002315

Overview

Ecosystem & Geography

Associated Families

Sequences