Scaffold Ga0208223_1001664

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1001664
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4736
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F005299	Metagenome / Metatranscriptome	405	Y
F017485	Metagenome	240	Y
F025025	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100166410	F003691	N/A	MNNYKTNEFNQYTEVAYNTSRNEKPQYRNFAGSKFNIPTKPNSIVEFKDFMGRVHKVSVKNNTELKKQMKFFAELKKESLTISQIISSYPISMGKVEKKFISQCRKELKQTLGLSKRAIDIVLG
Ga0208223_100166412	F017485	GGA	MNNELKTKDVLEGISFILMCIAIIGLMCVLYEVKELKRLTKDARNFRSITNQK
Ga0208223_10016643	F025025	N/A	MNKKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGEIEIETKMDKLETSLIKNVLSKKDKKELIATNVLEGALVSNKLTLDTAYSTYYNGGSINVESTTANGEDTDK
Ga0208223_10016647	F005299	N/A	MNKNITPTHLQSPIDTPNEIWEEKVGYDSANKRMVAKVYKHLYNVMELEVKPSWIKVITSMLFEDGRLGKVSLNGYYSTIRKNLKDIGVIQYNGRKGLSKGKNWDRFYGDEDWSWFITNTNSGGYGTIVK