Scaffold Ga0208223_1001660

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1001660
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4745
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F073458	Metagenome / Metatranscriptome	120	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100166016	F013631	N/A	MPYNTGTQAKETMTVLDVFHYTTSRWDWHEGNVNQMWIQEIEQSEDYYSYVAVAYNPRKDATMVMSEPRCYADTLNWVRKFCGSFCILPQYC
Ga0208223_10016606	F073458	N/A	MSDKLIALAAEIVDTNPAGAQLIVNLTNAETGAKLIEALDNYDSTVLENHTEPVDSEDDGYVSLTDAKGAVNTL
Ga0208223_10016607	F093764	N/A	MARRSKSASRQVVESLKDQLTEYFRENVFDDCDYENLTGSELFEALVETFKELENDLKEELKPIQYVLNKLDPEDSESQVLNG