NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1000620

Scaffold Ga0208223_1000620


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1000620 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8437
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F005479Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10006202F005479N/AMPELIATLKALKKREHGERKFLASLKGVDLGEYEDDSKEGSSFEEIELRAAGIHANPNDVVSLQGRFAAQAGFGIGEGLGYTKE
Ga0208223_10006205F000258GGAGGVTANYKLDAMLELRKYLWKELYTRNIFDEEDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTSVSDINEIRNYMTDEFRRMDESARDINKWTGLSDKFKFHSVWIADISPTAPSEELQGFFSAEVVLEIKYSRITDSIGNSPTAGRFL
Ga0208223_10006206F001900GGAMLVQAASGLERMMYANQSGPLKDSTVAQISAYVYYEAAVLSKLTTNAQFKALFTKTIFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKTARLFKLNKISEDGLSFRLNYEFLPSRSMVPGASGKRRHMFANKASVMEAGKPLVIRPKNAERLVFEIDGETVFMPKGKSVTVRRPGGSGSTNQFSLAHSRFFSSNLVNASIKNSGFQRIFNSSMSKALRVPSNIKKVQYSFSPNLIRSQADAALAASFGGAM
Ga0208223_10006207F001229GAGMNSIVDSVLSMNLDVYRQSEIQDTDTGAIVREWNFYKTVPCHVKGVISNSATTRSSDKQIFSNKYLNDQVVQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPSETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
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