Scaffold Ga0208223_1000282

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1000282
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13189
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10002821	F001808	N/A	YSCSAQYHLNKAIKKGFKCEETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIQYKNVYVPKTRIQLKREYKIKVKTIYKDKVVEKAEARAEGKKNQPKGNLNLLFVGVGIGLLLSYLWKYAKKSLI
Ga0208223_100028223	F014573	N/A	MTIYHFDMYIQDEQLRTEVKNILRLKTRNSIVKEIQDKGNKFHFFQLTNFLEGKDVSLSTLKKIDYFVNK
Ga0208223_10002824	F009004	AGG	LVTHTNLKTMKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLCTFLDYEQLQEVENLFNQFKK
Ga0208223_10002826	F009958	N/A	MKNRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEVSEKWLTETDDNLQPHVLGVRILEDLRLEMQEAINSDLVHYNFWEWKASNDESNYTFYHEL
Ga0208223_10002827	F006463	N/A	MTSGTIYDQLDWWQRQWRGTFDLGLYLEICRIKKNEQIKFKEMKRFKATFKTWAYVGAPIKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEQ