Scaffold Ga0208223_1000242

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1000242
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14270
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011486	Metagenome	290	Y
F011830	Metagenome / Metatranscriptome	286	Y
F097246	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100024219	F011486	N/A	MTKPYIVTKQPVVTSALAGTNKWVELCCKHSDGSLWNNGTFVNRDVRGKPGIISNHARGLATDLSYRWQAQHNRGRQDGRKISLAYMNKLLENADTLGIQLVIDYALTRSWKCDRGTWQAGKFETGDWWHVEIEPRLAHDPEAVKQAFSAVFGPSPKAAPQSV
Ga0208223_100024221	F097246	AGG	MTENIDPRTDAQFKALMQVMQDITSQKVPLVQPHELAARSTLRKLQWIIDDSNALDDSDLIDTCNQ
Ga0208223_10002428	F011830	AGGCGG	MATYKTATKQLLNNYACISTLEPSEIALGESVAVSGLAAPFTGTFTVLALPQYQFEGVDAETGEFLYNTNVAVPNQLLYACTGTAVEFVADYLGVVTYTQVCTWITATDIEDWIGIGTATAGDTTFLTICAAASNAFCYRRRQEVGYFDSLTTVPSQDVKLATVMYGGALYRQRGSITDFASFDGMATGSTNGLSPLVKQLLGVDRPQVA