Scaffold Ga0208223_1000134

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1000134
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18746
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (28.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F031454	Metagenome / Metatranscriptome	182	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100013413	F058096	N/A	MNAQLSIDECKVMWVVGALERLATLGMIGPDIPLQLSVDAVEDYMEIDNHRNLLFESDFEIVSIFNALSKDECVPEPEPEDVDAIVDLILQYKNNRTEIVKFALSHQTV
Ga0208223_100013415	F015080	N/A	MFDQLQFEAHPIPGAIQARYKFSNEWSISVVSGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIAWNTKAEVSAMMKVLVQL
Ga0208223_100013418	F048940	N/A	MTAAQRMEKQFFISFISLINEVQGKTKLPSQVVKNRKSAWVKQVSNPKQKKDALSLV
Ga0208223_100013425	F031454	N/A	MTFMNESTLDLFCQHEDETYADEYAMEFERKAAELEITVDYFLMEFV