Scaffold Ga0208223_1000040

Overview

Basic Information

• Taxon OID: 3300020519
• Scaffold ID: Ga0208223_1000040
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31759
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (25.84%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F001840	Metagenome / Metatranscriptome	627	Y
F002455	Metagenome / Metatranscriptome	557	Y
F009264	Metagenome / Metatranscriptome	320	N
F009402	Metagenome	318	Y
F024743	Metagenome / Metatranscriptome	204	N
F036669	Metagenome / Metatranscriptome	169	N
F039506	Metagenome / Metatranscriptome	163	N
F047570	Metagenome / Metatranscriptome	149	N
F054024	Metagenome	140	N
F058129	Metagenome	135	N
F093750	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_100004010	F036669	AGGAGG	MGMYDSIECKCFLPMPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWVEGDPNAKGFLDKVGHIKTKKTWLESVNKTCTVQFYDFFSSNKTDYDYWIVYDAVFIDGKIKDIKLTTFEATANGERKKKDIEFHNKLREWDEFRKTRRYKYFLNPYNKILKFICDKVYKALCFLSSRVWRVHNFLMIK
Ga0208223_100004011	F001840	N/A	VKEEKDSEFLICDCYSHGLLVEKFDDEEVCLSLFERGLSGRTLGWSERLRWCWQILRYGKPWSDFIILNAENQKKLKEFLK
Ga0208223_100004035	F047570	N/A	MTDENKLKIVTLSHNIKALCYILDKKTFSEHCVASGTFTEIDSLFELVKELKEMNKEE
Ga0208223_100004036	F024743	N/A	MDVVALSNLYSHASGAYNKAKDAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYQNEKE
Ga0208223_100004045	F058129	N/A	MTVYLVYNNSDRDGGIDAIFDTERKALDFMIKECYPDHYFKSMDSTSLDNLARKYVVEMTVH
Ga0208223_100004060	F093750	N/A	MKFKVSYYDFDTDKYVTKECYRMGFYDGIFEFMTVDDPIKSIIIDHPIFSVSQNTGFISISVVGYQYTKNGSYEKTTTKVENVRED
Ga0208223_100004065	F039506	N/A	MTKYVKLIAKPDTWFKAGTEAFDYDEYGKRITLESYNKWLKSGSILVRGIRVCEHDYELKLGYKLGEEREDGELCGIDEFDMTIVDDEKDIPWPKPLDPPTTTAEAEARQKKFEDNIRCIQG
Ga0208223_100004066	F002455	N/A	MTDTRTYYYDIYGKMEPDYESMAAYLLDEGVLFVTSAIDRCTQKECLGLYILINDYFVPASDAESITYNELPKLYELYKEKQWDGVSQFVADKRGIPDLHWRDKNSAFQKKLDLL
Ga0208223_100004073	F000962	N/A	MNIHAPEELKIKYPQYEFRGKQREINDRIVIEAYNPVTEQTFYYSFEEDFFWMAGQIPDYKLQKP
Ga0208223_100004076	F009264	N/A	MRAYLEFSLMDDEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTGSHKLKYASQGCVTYSSDKIVGVELEFRDYPYQIDDCQMNPRISVKLDYDDFNKKMDYVCFQNLKYQAVVYFAPDSWNCSRKSKKIKF
Ga0208223_100004082	F054024	N/A	MSDKYSNHFYIEGPYDDLVNVTKDLDFAEGSINYDGWEIEGGSAVLHFDGYFCPLDEAANASVKYPSLKIIFRFTHELLTAGLYIYDGGKIKLRSYYDWDTGESSVKKYD
Ga0208223_100004085	F009402	N/A	MKKLDKEFESSSFKYKQIHRENMFAIYERHHISSETKHYEAIKIQSHNGYEIAGNKIPPSECYPTSNSWGTQGYTCLDKKAAYNRLDRMIKEDVRNKEIANKKAERKKAK