Scaffold Ga0208721_1000407

Overview

Basic Information

• Taxon OID: 3300020518
• Scaffold ID: Ga0208721_1000407
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9524
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F015583	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208721_100040715	F015583	AGGAG	MKFVFALVVLFLPLAAQAQTVIVRGPAVISAQEHATIIARRGTLVHSSCGQTEGIGMGSTPEAARKNCCFFGKRVIVEEGVAYSPATRRWYAVIRYR
Ga0208721_10004074	F002540	AGGAG	MSTPNYTATADEYAKYGNNLNVWEQLRLLSQWAPLLSYGQAFVNAVDPYKKSLVVADAAEWVASKTSAKVDDQLVRLLADILKTPQGEALVRWCLLKAEEAK