Scaffold Ga0208721_1000008

Overview

Basic Information

• Taxon OID: 3300020518
• Scaffold ID: Ga0208721_1000008
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44046
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (45.90%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034548	Metagenome / Metatranscriptome	174	Y
F041806	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208721_100000831	F041806	N/A	MTAKLTDPASFLSGLVTKKGKSELLGVYLTGVNVLADSLEDYNYPVSLDRIQSEVHQTFRKDENDWNHLLVETRRNIDEIVYPISFLRGREPNTVYFIVEGHEMSAMVFIPTLVVEEFAVEVIFFQCLLREVSSFAGKVPGSIRFTIGAASMLWDDLVERGHAKEVDVGF
Ga0208721_100000832	F034548	AGG	MRLYLLCASLFSKMDKFPGSKTQDAATPLNSAGTPTQPYGNAAGNFDLKNKYGTRKVKSRRDLDQPKNGEEPMRDGTAAEYIEGPLNTGGSQTDDANQRYFGSFSIEAKRNVFDLLKNHPEFARKGPMNMGRVGNNTREVMPGDPTKIIENGGYIVYEDQPQASQTKYKNDRKTN