Scaffold Ga0208721

Basic Information
Taxon OID	3300020518 Open in IMG/M
Scaffold ID	Ga0208721_1000005 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020518 Open in IMG/M

Scaffold ID

Ga0208721_1000005 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46992
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (50.91%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

46992

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (50.91%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F036666	Metagenome / Metatranscriptome	169	N
F042808	Metagenome / Metatranscriptome	157	N
F063494	Metagenome / Metatranscriptome	129	N
F072266	Metagenome / Metatranscriptome	121	N
F083941	Metagenome / Metatranscriptome	112	N
F097235	Metagenome / Metatranscriptome	104	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208721_100000530	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDDRFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVQPQLTADAGKRVLLQGLDPNGNPIRTLDTVTGEYVWGEYVTLPNPAVTAYVQTVNLFKQPGLTGAQKPLTQGSLTILAYNQTTTLQTQIAVWGPSEQNPEYRRTYLIGMPEVCGGTSGCNAEAQNDCIDHGDGCVPADENCTNTVVEAIVRLDFIPAVVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELETYSPNERTVVNVQVWGSAKIQYRLGGFI
Ga0208721_100000533	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFDDPTVVYNNGYYNAAVKKAFEKGQFQGCGTYIADNTDPFLFASVGGKVFQIDIKNGFKVTDLTPINFTFQVQTRGRVSNVATYVCGVPHGLSPGMVVRLTEPPGAFFPDGFFGDFIVETVPSATTFTTYSPGVDAGPLLGPAFNCYQMATNDPQGSHVYFQQAENWLVIQDGQNQPYLYNGSTLRRATGEEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPSYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVAVNGDLIFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTDFYLTAASAVNFDNRMLMTIQPRKINNRGIVHGGLVVLDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTVRVKRTERCFAFGLNQDYIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGDIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPTRSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDLYGDLSRVACPLLST
Ga0208721_100000537	F036666	N/A	MYNQGLQAVARAAAKLRQTAQGARILAEWLGDGGTPVERQQAQDRIDTCKRCLHNKPTDTRSITKTVAEAILEQEQARNEMVMFLHGEGLAGTCDVCGCYLKLKVWVPLSYLGDTVMPDNCWISQERKSI
Ga0208721_100000539	F072266	N/A	MIQSPKQEFQRDKDRVMELERLLDNANFQAALLAAFNNLCWNLPASENPQHGWNANCRRQGAKALIEELHGLVTTQRDKPTVKQNLE
Ga0208721_100000542	F002621	N/A	MRQNLSRTIWLLVLPICLGCQTKVILVPNGDPVLLAEPVRAKVYAFDKQGNLAGPSTVKIPAGWYALPKAK
Ga0208721_100000544	F083941	N/A	MPEENLHNLEVRIVRLETIIGDKDAGMVSDIHGIKSTVEGLKQFQWKLFGGLGVLVVLAQLIGRIGLK
Ga0208721_100000548	F097235	AGGA	MYGQMMGKRKMDGMGRMGAEVETVEFMPPEGMKLEGESGTAMVDWRMTPNGTVEIVAFDGITLGESGRQDVEEVEGAEMEMDDMEEEA
Ga0208721_100000549	F028149	AGGAG	MAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELAGSLVGGNSFACAAGLPPINFSWVGAGYTTLRVTNNAAAAITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLSKTNASLYDAWRFGVFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNATATAGNYTLVLPYKNVAATEGIKSVFNEDYDKAQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQSYNSEDPTCGVVVQFTAVANDAGNFVIGTTGILCDENIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNVIQLAGSAIGTTTEVVPCTNVTLEFAI
Ga0208721_100000552	F063494	N/A	VKYVPIIYQDPTFRAAAITQALRQTAPKHLSPEATYRFYELLGMICGSNPPTPDQLQTALLEANEYDLNSED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208721_1000005

Overview

Ecosystem & Geography

Associated Families

Sequences